ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIRf38
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGGTGGGATTTCTCCGGTGA miRNA* GCCGGAGGAATGTCACCGGAG mismatches: 4 bulges: 0 |
pre-miRNA
ACCTCAAACTGAGCTGATTCAACGGTGGGATTTCTCCGGTGAAGTGATTGTCTTCTAGATAAAGAACATACAACCGGGATAGATTTGTTAAGGCCGGAGG
AATGTCACCGGAGAGTTTGTTTCCGGCGAGA
dot-bracket secondary structure
..(((...((((((.(((((..((((((.(((((((((((....((((.(((((((....................))).))))..))))..))))))))
))).))))))..))))).)))..))).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ACCTCAAACTGAGCTGATTCAACGGTGGGATTTCTCCGGTGAAGTGATTGTCTTCTAGATAAAGAACATACAACCGGGATAGATTTGTTAAGGCCGGAGG
AATGTCACCGGAGAGTTTGTTTCCGGCGAGA
dot-bracket secondary structure
..(((...((((((.(((((..((((((.(((((((((((....((((.(((((((....................))).))))..))))..))))))))
))).))))))..))))).)))..))).))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q84MA9|Y1063_ARATH: 0.0000001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
