ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIRf1017
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTATCTGCATTTGCACCTG miRNA* GGTGCTCATGCAGACAAAAAT mismatches: 4 bulges: 0 |
pre-miRNA
TTTCTGTAAACAAGAGACATATTTTTATCTGCATTTGCACCTGCACCTTAGTGAACGAATTTGTTAGCATATAATTCGTGCAGAAAGGTGTTGGTGCTCAT
GCAGACAAAAATGGTATCTTGGCCTTCCAT
dot-bracket secondary structure
).........(((((.((.(((((((.(((((((..(((((.(((((((..((.(((((((...((...)).))))))).))..))))))).)))))..))
))))).))))))))).))))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTTCTGTAAACAAGAGACATATTTTTATCTGCATTTGCACCTGCACCTTAGTGAACGAATTTGTTAGCATATAATTCGTGCAGAAAGGTGTTGGTGCTCAT
GCAGACAAAAATGGTATCTTGGCCTTCCAT
dot-bracket secondary structure
).........(((((.((.(((((((.(((((((..(((((.(((((((..((.(((((((...((...)).))))))).))..))))))).)))))..))
))))).))))))))).))))).........
SIMILARITIES| miRBase ptc-MIR530a: 3.0E-8 PMRD ptc-miRf11026-akr: 3.0E-8 microPC miR1030: 2.0E-5 | UniProt no hits RFAM 0MIR530: 5.0E-7 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
