ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIRf1017
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTATCTGCATTTGCACCTG miRNA* GGTGCTCATGCAGACAAAAAT mismatches: 4 bulges: 0 |
pre-miRNA
TTCTGTAAACAAGAGACATATTTTTATCTGCATTTGCACCTGCACCTTAGTGAACGAATTTGTTAGCATATAATTCGTGCAGAAAGGTGTTGGTGCTCAT
GCAGACAAAAATGGTATCTTGGCCTTCCAT
dot-bracket secondary structure
.........(((((.((.(((((((.(((((((..(((((.(((((((..((.(((((((...((...)).))))))).))..))))))).)))))..))
))))).))))))))).))))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCTGTAAACAAGAGACATATTTTTATCTGCATTTGCACCTGCACCTTAGTGAACGAATTTGTTAGCATATAATTCGTGCAGAAAGGTGTTGGTGCTCAT
GCAGACAAAAATGGTATCTTGGCCTTCCAT
dot-bracket secondary structure
.........(((((.((.(((((((.(((((((..(((((.(((((((..((.(((((((...((...)).))))))).))..))))))).)))))..))
))))).))))))))).))))).........
SIMILARITIES| miRBase ptc-MIR530a: 0.00000003 PMRD ptc-miRf11026-akr: 0.00000003 microPC miR1030: 0.00002 | UniProt no hits RFAM MIR530: 0.0000005 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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