ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: miR4249
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGATTTGAGAAGTTGAGGTA miRNA* CCTCCACTCATTTAGATCAATG mismatches: 5 bulges: 1 |
pre-miRNA
GATGTTTTGCCGCCTCCACTCATTTAGATCAATGATGTTCATTCCAAATGCCCAACCACAAGCACGAGGATCAAAATTTTTAGAGATCAGAGGATTTGAG
AAGTTGAGGTAGCGGTCAAA
dot-bracket secondary structure
..((..((((.(((((.(((..((((((((..((((.(((..(((...(((..........)))...)))...((....)).)))))))...))))))))
.))).))))).)))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
GATGTTTTGCCGCCTCCACTCATTTAGATCAATGATGTTCATTCCAAATGCCCAACCACAAGCACGAGGATCAAAATTTTTAGAGATCAGAGGATTTGAG
AAGTTGAGGTAGCGGTCAAA
dot-bracket secondary structure
..((..((((.(((((.(((..((((((((..((((.(((..(((...(((..........)))...)))...((....)).)))))))...))))))))
.))).))))).)))).))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q93ZX7|GAUT4_ARATH: 1e-16 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
