ABOUT THIS RECORDspecies: Gadus morhua
miRNA family: mir-1179
source: miRNEST
Taxonomy by NCBI:
Gadus morhua Gadus Gadidae Gadiformes Paracanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAACATTCTTTCATTGGATGC miRNA* GCTCAGTGAGGAGTGAAGTC mismatches: 4 bulges: 1 |
pre-miRNA
TGGATTGTAGTTTTTTCTTGGTGCTCAGTGAGGAGTGAAGTCGGTGTTCTGCCGCTCCCGTTAATCACAGATCTGTAACTCATCATGGGATAGGAGACAA
GCCGATGCACAGGGGGGGGGGGTCAATAAAGTGTCACGAGCCTGCACTTTTAAACCTGAAACCTGTCAAACATTCTTTCATTGGATGCCATTAAAGAGTA
CCTGTTC
dot-bracket secondary structure
.((((.(((.(((((...(((((.(((((((((((((..((((((..(((.((..((((((.....(((....)))........))))))..)))))...
))))))..(((((......((((....(((((((.........)))))))...))))....)))))....))))).)))))))).)))))..))))).))
)..))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGGATTGTAGTTTTTTCTTGGTGCTCAGTGAGGAGTGAAGTCGGTGTTCTGCCGCTCCCGTTAATCACAGATCTGTAACTCATCATGGGATAGGAGACAA
GCCGATGCACAGGGGGGGGGGGTCAATAAAGTGTCACGAGCCTGCACTTTTAAACCTGAAACCTGTCAAACATTCTTTCATTGGATGCCATTAAAGAGTA
CCTGTTC
dot-bracket secondary structure
.((((.(((.(((((...(((((.(((((((((((((..((((((..(((.((..((((((.....(((....)))........))))))..)))))...
))))))..(((((......((((....(((((((.........)))))))...))))....)))))....))))).)))))))).)))))..))))).))
)..))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
