ABOUT THIS RECORDspecies: Vigna unguiculata
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGGGAACAGGCAGAGCATGG miRNA* ATGCACTGCCTCTTCCCTGGC mismatches: 3 bulges: 0 |
pre-miRNA
CAGGACAGAGCAGGGGAACAGGCAGAGCATGGATGGAGTCATCAACACAATAGAGCCAAGAAAATGAGAGTGACAGAACAAATTATCTGTTGTGATTCTG
CTCATGCACTGCCTCTTCCCTGGCTCTATCAG
dot-bracket secondary structure
...((.(((((.((((((.((((((.((((((.((((((((.(((((..((((..........((....))...........)))).)))))))))))))
.)))))).)))))).)))))).))))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAGGACAGAGCAGGGGAACAGGCAGAGCATGGATGGAGTCATCAACACAATAGAGCCAAGAAAATGAGAGTGACAGAACAAATTATCTGTTGTGATTCTG
CTCATGCACTGCCTCTTCCCTGGCTCTATCAG
dot-bracket secondary structure
...((.(((((.((((((.((((((.((((((.((((((((.(((((..((((..........((....))...........)))).)))))))))))))
.)))))).)))))).)))))).))))).))..
SIMILARITIES| miRBase ahy-MIR408: 0.000000007 PMRD ppe-miR408: 0.00000003 microPC miR408: 0.00000003 | UniProt no hits RFAM MIR408: 0.0000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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