ABOUT THIS RECORDspecies: Vigna unguiculata
miRNA family: MIR164
source: miRNEST
Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CATGTGCCCCTCTTCCCCATC mismatches: 5 bulges: 0 |
pre-miRNA
TGCCAAAGGTGCATGCTGGGCAAGATGGAGAAGCAGGGCACGTGCAATTCTAACTCATCAACGCACGAATGAACCCAGAGAATCACTTTCCTTTTCTGCT
TTTCACCAACCAGATTCATAGATTCCTCTTTAGTTGCAGTGAGTTAGTCCTTCATGTGCCCCTCTTCCCCATCATGACGGCAGCACCTTGTGTAG
dot-bracket secondary structure
(((..(((((((.(((((..((.(((((.((((..(((((((((.....(((((((((....(((....((((...((.(((((..........((((.(
(......)).))))......))))))).))))..))).))))))))).....)))))))))..)))).))))).)).))))))))))))..))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TGCCAAAGGTGCATGCTGGGCAAGATGGAGAAGCAGGGCACGTGCAATTCTAACTCATCAACGCACGAATGAACCCAGAGAATCACTTTCCTTTTCTGCT
TTTCACCAACCAGATTCATAGATTCCTCTTTAGTTGCAGTGAGTTAGTCCTTCATGTGCCCCTCTTCCCCATCATGACGGCAGCACCTTGTGTAG
dot-bracket secondary structure
(((..(((((((.(((((..((.(((((.((((..(((((((((.....(((((((((....(((....((((...((.(((((..........((((.(
(......)).))))......))))))).))))..))).))))))))).....)))))))))..)))).))))).)).))))))))))))..))).
SIMILARITIES| miRBase csi-MIR164: 0.000000000003 PMRD mtr-miR164b: 0.000000000003 microPC miR164: 4e-79 | UniProt no hits RFAM MIR164: 0.0000000000002 | most similar mature miRNAs |
Identical with: miR164 from microPC (MNEST045452) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
