ABOUT THIS RECORDspecies: Vigna unguiculata
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCCAAGGATGACTTGCCGGC miRNA* CGGCAAGTTGTTCTTGGCTAC mismatches: 2 bulges: 0 |
pre-miRNA
AGGTTCTCTCAACTCACAACAAGAGGCAGAAAGTAGAGTGCATCCAAGGATGACTTGCCGGCAGTTATGTGTTTACTCTCTCTTCGTCGTCGTTTTTTTC
GTCGGCCGGCAAGTTGTTCTTGGCTACATTTTGCTCTCTTCTTCTGCTGTGATGCTTTGAGGACT
dot-bracket secondary structure
.(((((((.....(((((...(((((.(((.(((((((((...(((((((((((((((((((......................................
....)))))))))))))))))))...))))))))).))).)))))..)))))......)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGGTTCTCTCAACTCACAACAAGAGGCAGAAAGTAGAGTGCATCCAAGGATGACTTGCCGGCAGTTATGTGTTTACTCTCTCTTCGTCGTCGTTTTTTTC
GTCGGCCGGCAAGTTGTTCTTGGCTACATTTTGCTCTCTTCTTCTGCTGTGATGCTTTGAGGACT
dot-bracket secondary structure
.(((((((.....(((((...(((((.(((.(((((((((...(((((((((((((((((((......................................
....)))))))))))))))))))...))))))))).))).)))))..)))))......)))))))
SIMILARITIES| miRBase vvi-MIR169s: 0.00000003 PMRD vvi-miR169s: 0.00000003 microPC miR169: 3e-27 | UniProt no hits RFAM MIR169_2: 0.000000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
