ABOUT THIS RECORDspecies: Macaca fascicularis
miRNA family: mir-122
source: miRNEST
Taxonomy by NCBI:
Macaca fascicularis Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACACCATTGTCACACTCCA miRNA* TAGTGTGATAATGGCGTTTG mismatches: 4 bulges: 0 |
pre-miRNA
TATCGAGGGAAGGATTGCCTAGTAGTAGCTATTTAGTGTGATAATGGCGTTTGATAGTTTAGACACAAACACCATTGTCACACTCCACAGCTCTGCTAAG
GAAAATCTGCAGCCACG
dot-bracket secondary structure
.......((..(((((.((((((((.((((....(((((((((((((.(((((............))))).)))))))))))))....))))))))).))
)..)))))....))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATCGAGGGAAGGATTGCCTAGTAGTAGCTATTTAGTGTGATAATGGCGTTTGATAGTTTAGACACAAACACCATTGTCACACTCCACAGCTCTGCTAAG
GAAAATCTGCAGCCACG
dot-bracket secondary structure
.......((..(((((.((((((((.((((....(((((((((((((.(((((............))))).)))))))))))))....))))))))).))
)..)))))....))...
SIMILARITIES| miRBase mml-mir-122a: 6e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-122: 2e-21 | most similar mature miRNAs |
Identical with: mml-mir-122a from miRBase (MNEST027714) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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