ABOUT THIS RECORDspecies: Litopenaeus vannamei
miRNA family: miR-3261
source: miRNEST
Taxonomy by NCBI:
Litopenaeus vannamei Litopenaeus Penaeidae Penaeoidea Dendrobranchiata Decapoda Eucarida Eumalacostraca Malacostraca Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGTAATTAAGGATAAGGTAA miRNA* CTTCTGTTTTTAATTATTTAA mismatches: 3 bulges: 0 |
pre-miRNA
ATTCACTAATTTAGTAATTAAGGATAAGGTAAGATATTTTGACTAACCAACAATTAAATTATTCTTGCGATATATTTTATGGGGATTTTCAGCTATCTCG
ATCCAGTTTTTTTCTTCTTCTGTTTTTAATTATTTAATTTTCCTA
dot-bracket secondary structure
.......((((.((((((((((((((.((.((((......((((..(((.....((((.((((.....))))...)))))))(((((............)
))))))))....)))).)).)))))))))))))).))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
ATTCACTAATTTAGTAATTAAGGATAAGGTAAGATATTTTGACTAACCAACAATTAAATTATTCTTGCGATATATTTTATGGGGATTTTCAGCTATCTCG
ATCCAGTTTTTTTCTTCTTCTGTTTTTAATTATTTAATTTTCCTA
dot-bracket secondary structure
.......((((.((((((((((((((.((.((((......((((..(((.....((((.((((.....))))...)))))))(((((............)
))))))))....)))).)).)))))))))))))).))))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
