ABOUT THIS RECORDspecies: Anolis carolinensis
miRNA family: mir-450
source: miRNEST
Taxonomy by NCBI:
Anolis carolinensis Anolis Polychrotinae Iguanidae Iguania Squamata Lepidosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTGCATTATGTTCCTGAAT miRNA* TTAGGAAAAATGTAAAACT mismatches: 3 bulges: 2 |
pre-miRNA
AGTGCCAGCATTCTCAGTAGAGTTAGGAAAAATGTAAAACTTGATATATCCATTACTGAAAAATGAAGTCTGAGATGTTTGTGTTTGTGAAAAGGAATCT
AGTAAAAATTATTACTCTTAAACTGAATGAATTAGCTTTCTCCCTCTTTTGTGCATGGATACTTAACCTATTTCTGCATTATGTTCCTGAATCTTGCTGA
ACATACCCTTG
dot-bracket secondary structure
.((....))....((((((((.(((((((.((((((.((.((((..((((((((((........((((...((((.(((...((((((....((......
(((((......)))))......))..)))))).)))..))))...)))).))).))))))).)))).....)).))))))...))))))).)).))))))
...........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGTGCCAGCATTCTCAGTAGAGTTAGGAAAAATGTAAAACTTGATATATCCATTACTGAAAAATGAAGTCTGAGATGTTTGTGTTTGTGAAAAGGAATCT
AGTAAAAATTATTACTCTTAAACTGAATGAATTAGCTTTCTCCCTCTTTTGTGCATGGATACTTAACCTATTTCTGCATTATGTTCCTGAATCTTGCTGA
ACATACCCTTG
dot-bracket secondary structure
.((....))....((((((((.(((((((.((((((.((.((((..((((((((((........((((...((((.(((...((((((....((......
(((((......)))))......))..)))))).)))..))))...)))).))).))))))).)))).....)).))))))...))))))).)).))))))
...........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
