ABOUT THIS RECORDspecies: Paracentrotus lividus
miRNA family: miR-4339
source: miRNEST
Taxonomy by NCBI:
Paracentrotus lividus Paracentrotus Echinidae Echinoida Echinacea Euechinoidea Echinoidea Echinozoa Eleutherozoa Echinodermata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGCTGAGCTGCCCCTCCTCG miRNA* ATTTGGGCAGCTGCAGCTGGG mismatches: 4 bulges: 2 |
pre-miRNA
AGGCTGTGTCCGAGCTGAGCTGCCCCTCCTCGTCCTCGACAGTCTACATCGGGCTCCCGGCCCCAGGCACTGCCGCGCCCGCCCGACCCGGGTAGATCTA
CGACATTGCCGATGATCGATTTGGGCAGCTGCAGCTGGGATTGGGAT
dot-bracket secondary structure
...((..((((.(((((((((((((....(((((.(((.((((((((.((((((....(((....(((...)))..))).)))))).....))))))...
......)).))).)).)))...)))))))).))))).))))..))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGGCTGTGTCCGAGCTGAGCTGCCCCTCCTCGTCCTCGACAGTCTACATCGGGCTCCCGGCCCCAGGCACTGCCGCGCCCGCCCGACCCGGGTAGATCTA
CGACATTGCCGATGATCGATTTGGGCAGCTGCAGCTGGGATTGGGAT
dot-bracket secondary structure
...((..((((.(((((((((((((....(((((.(((.((((((((.((((((....(((....(((...)))..))).)))))).....))))))...
......)).))).)).)))...)))))))).))))).))))..))..
SIMILARITIES| miRBase ssc-mir-4339: 0.0001 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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