ABOUT THIS RECORDspecies: Paracentrotus lividus
miRNA family: mir-1280
source: miRNEST
Taxonomy by NCBI:
Paracentrotus lividus Paracentrotus Echinidae Echinoida Echinacea Euechinoidea Echinoidea Echinozoa Eleutherozoa Echinodermata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCACCGCTGCCACCATGTT miRNA* CATGTTTGTAGCGGTGCGGAGT mismatches: 5 bulges: 1 |
pre-miRNA
CTGTGATTGTATCCCACCGCTGCCACCATGTTATGCCTGGTGCATGGACACATGGTCAATAAATTGCTCTGTTGAGATGATAAATATCGGATGTCTTTTG
CATTTATTCTGTCATGTTTGTAGCGGTGCGGAGTAACACGTT
dot-bracket secondary structure
.((((.(((..((((((((((((...((((........((((((.(((((..((((..........(((....))).........))))..)))))..))
))))........))))...))))))))).))).)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTGTGATTGTATCCCACCGCTGCCACCATGTTATGCCTGGTGCATGGACACATGGTCAATAAATTGCTCTGTTGAGATGATAAATATCGGATGTCTTTTG
CATTTATTCTGTCATGTTTGTAGCGGTGCGGAGTAACACGTT
dot-bracket secondary structure
.((((.(((..((((((((((((...((((........((((((.(((((..((((..........(((....))).........))))..)))))..))
))))........))))...))))))))).))).)))))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
