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ABOUT THIS RECORD
ID:
MNEST007777
species:
Lepeophtheirus salmonis
miRNA family:
miR-2831
source:
miRNEST
Taxonomy by NCBI:
Lepeophtheirus salmonis
Lepeophtheirus
Caligidae
Siphonostomatoida
Podoplea
Neocopepoda
Copepoda
Maxillopoda
Crustacea
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CACAAACAAAGCATTTTTTTC
miRNA*
AATGAATGCAATTGTTGTTGTT
mismatches:
5
bulges:
1
View larger
pre-miRNA
TCCCACACCTCCCCCTGAACCTGAAACATAA
AATGAATGCAATTGTTGTTGTT
AACTTGTTTATTGCAGCTTATAACGGTTACAAATAAAGCAATACCAT
CACAAATTT
CACAAACAAAGCATTTTTTTC
ACTGCATTCTAGTTGCGGTTTGTCCAAAC
dot-bracket secondary structure
..............................(
((.((((((..(((((..((..
((.((((.((((((...((((...........)))).))))))....
.)))).)).
))..))))).)))))).))).
((((((.......))))))..........
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
SVLPA: 2e-19
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record