ABOUT THIS RECORDspecies: Lepeophtheirus salmonis
miRNA family: mir-993
source: miRNEST
Taxonomy by NCBI:
Lepeophtheirus salmonis Lepeophtheirus Caligidae Siphonostomatoida Podoplea Neocopepoda Copepoda Maxillopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAAGCTCGACTCTACAGGTAT miRNA* ACCCTGTTGATCCGGGCCTTTG mismatches: 5 bulges: 1 |
pre-miRNA
AATAAGACCCCATACGTATTCTACCCTGTTGATCCGGGCCTTTGTAGAACTTAACTTATCGACATTCGTTGGAACAATACAAACAAGCATTTGTTTGATT
TGTATTGCAAAAACAATTTCGATTGTTTCAGAAGCTCGACTCTACAGGTATCGTACTGTATGGTTACAAT
dot-bracket secondary structure
.........((((((((((..((((.(((.((..(((((.((((........(((..(((((.(((.(((....((((((((((((((....))))).))
)))))))....)))))).))))).))).)))).)))))..)).)))))))..)))).)))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATAAGACCCCATACGTATTCTACCCTGTTGATCCGGGCCTTTGTAGAACTTAACTTATCGACATTCGTTGGAACAATACAAACAAGCATTTGTTTGATT
TGTATTGCAAAAACAATTTCGATTGTTTCAGAAGCTCGACTCTACAGGTATCGTACTGTATGGTTACAAT
dot-bracket secondary structure
.........((((((((((..((((.(((.((..(((((.((((........(((..(((((.(((.(((....((((((((((((((....))))).))
)))))))....)))))).))))).))).)))).)))))..)).)))))))..)))).)))))).......
SIMILARITIES| miRBase api-mir-993: 0.00003 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
