ABOUT THIS RECORDspecies: Lepeophtheirus salmonis
miRNA family: miR-2149
source: miRNEST
Taxonomy by NCBI:
Lepeophtheirus salmonis Lepeophtheirus Caligidae Siphonostomatoida Podoplea Neocopepoda Copepoda Maxillopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCAGCAGTTGTACATTTACT miRNA* TTAAAGTTTGACACTGATTT mismatches: 4 bulges: 1 |
pre-miRNA
CATAACTTTCCAGTTAAAGTTTGACACTGATTTGGTGGAGGAGTTGGCTCAGATGCACAATCAGAAGGACAGATTCCATATTCATTAGCCTCTTGATTTG
AAAATAATGAATTAGCACACCATGGCACACCACCATTATCAGCAGTTGTACATTTACTATAAGTGTCT
dot-bracket secondary structure
....((((...(((.((.((.((((.(((((.((((((.((((((..(((.(((.....))).))..)...))))))..((((((((...((.......)
)...))))))))..((........))...))))))..)))))..)))).)).)).)))..))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CATAACTTTCCAGTTAAAGTTTGACACTGATTTGGTGGAGGAGTTGGCTCAGATGCACAATCAGAAGGACAGATTCCATATTCATTAGCCTCTTGATTTG
AAAATAATGAATTAGCACACCATGGCACACCACCATTATCAGCAGTTGTACATTTACTATAAGTGTCT
dot-bracket secondary structure
....((((...(((.((.((.((((.(((((.((((((.((((((..(((.(((.....))).))..)...))))))..((((((((...((.......)
)...))))))))..((........))...))))))..)))))..)))).)).)).)))..))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
