ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: mir-548
source: miRNEST
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAATCCACAATTACTTTTGC miRNA* AAAAATAATTGCTGTTTTTGC mismatches: 3 bulges: 2 |
pre-miRNA
CTAGGCTGGTACAAAAATAATTGCTGTTTTTGCCATTACTTTTAACAGCAAAATCCACAATTACTTTTGCACCAACCTA
dot-bracket secondary structure
.((((.((((.(((((.((((((.((.((((((..(((....)))..))))))..)))))))).))))).)))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTAGGCTGGTACAAAAATAATTGCTGTTTTTGCCATTACTTTTAACAGCAAAATCCACAATTACTTTTGCACCAACCTA
dot-bracket secondary structure
.((((.((((.(((((.((((((.((.((((((..(((....)))..))))))..)))))))).))))).)))).))))
SIMILARITIES| miRBase hsa-mir-548i-1: 5e-30 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 4e-31 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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