ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: mir-548
source: miRNEST
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAAGTAATTGCCGTTTTTGC miRNA* AGTAATGGCACATTACTTTTGC mismatches: 3 bulges: 1 |
pre-miRNA
ATAACTATTAGGTTGGTGCAAAAGTAATTGCCGTTTTTGCCATTAAAAGTAATGGCACATTACTTTTGCACCAACCGACCTAATA
dot-bracket secondary structure
..........(((((((((((((((((((((((((.((.........)).))))))).)))))))))))))))))).........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATAACTATTAGGTTGGTGCAAAAGTAATTGCCGTTTTTGCCATTAAAAGTAATGGCACATTACTTTTGCACCAACCGACCTAATA
dot-bracket secondary structure
..........(((((((((((((((((((((((((.((.........)).))))))).)))))))))))))))))).........
SIMILARITIES| miRBase hsa-mir-548i-1: 3e-19 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 2e-17 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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