ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIRf472
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTTCTGCAAGTGACTTTTG miRNA* AGTTGCAGTCGAAGTGCT mismatches: 5 bulges: 1 |
pre-miRNA
GTCTGGACTTCTAGTTGCAGTCGAAGTGCTTCTGCTATTCGCAAGCCTGTTTCGGGGTCAAACTTTGTTATGAAATCTGCACAAGTTCCCTTCTCAGATT
TTTCTTCTGTTGATCCTGGTAGGTGCCTTGCAATACGATACTTCTGCAAGTGACTTTTGATTTGGAAG
dot-bracket secondary structure
.((((((..((.((((((.((.((((((..((...((((.((((((((...((((((((((..........((((((((...(((....)))..))))))
)).......))))))))))..)).).))))))))).)))))))).))..))))))...))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTCTGGACTTCTAGTTGCAGTCGAAGTGCTTCTGCTATTCGCAAGCCTGTTTCGGGGTCAAACTTTGTTATGAAATCTGCACAAGTTCCCTTCTCAGATT
TTTCTTCTGTTGATCCTGGTAGGTGCCTTGCAATACGATACTTCTGCAAGTGACTTTTGATTTGGAAG
dot-bracket secondary structure
.((((((..((.((((((.((.((((((..((...((((.((((((((...((((((((((..........((((((((...(((....)))..))))))
)).......))))))))))..)).).))))))))).)))))))).))..))))))...))))))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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