ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: miR172c
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAGCATCATCAAGATTCACA miRNA* GGAATCTTGATGATGCTGCCG mismatches: 2 bulges: 0 |
pre-miRNA
GGGGGGAGCATCATCAAGATTCACAAGTATTGAGACTCAGTGCGTGGTGGTGATGGTGACTTATGTGGTCCCTTCCTACACTCCGATGGCTCTTTGATATG
GGAATCTTGATGATGCTGCCG
dot-bracket secondary structure
)..((.((((((((((((((((.((.((...((((.(((...((.((((..((.((.((((.....)))))).))...)))).)).))).))))..)).))
.)))))))))))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGGGGAGCATCATCAAGATTCACAAGTATTGAGACTCAGTGCGTGGTGGTGATGGTGACTTATGTGGTCCCTTCCTACACTCCGATGGCTCTTTGATATG
GGAATCTTGATGATGCTGCCG
dot-bracket secondary structure
)..((.((((((((((((((((.((.((...((((.(((...((.((((..((.((.((((.....)))))).))...)))).)).))).))))..)).))
.)))))))))))))))).)).
SIMILARITIES| miRBase vvi-MIR172c: 1.0E-56 PMRD vvi-miR172c: 1.0E-56 microPC miR172: 9.0E-5 | UniProt no hits RFAM 2mir-172: 2.0E-55 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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