ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
GACGGTGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGACTTCGCCGCTCCGGCAGCGCCGGAGGCACGCGGCGGCCTACGATTGGTTGCTGAGCGAAT
TCCGATCCCGCCTTGCATCAACTGAATCGGAGACGGCGG
dot-bracket secondary structure
)...((.((((((.(((((.((((((((((.(((((...((.(((((.((((((((...)))))).))...((((((((.......)))))))).))))).
))...))))).)))))))))).))))).)))))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
GACGGTGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGACTTCGCCGCTCCGGCAGCGCCGGAGGCACGCGGCGGCCTACGATTGGTTGCTGAGCGAAT
TCCGATCCCGCCTTGCATCAACTGAATCGGAGACGGCGG
dot-bracket secondary structure
)...((.((((((.(((((.((((((((((.(((((...((.(((((.((((((((...)))))).))...((((((((.......)))))))).))))).
))...))))).)))))))))).))))).)))))).))..
SIMILARITIES| miRBase vvi-MIR168: 6.0E-71 PMRD vvi-miR168: 6.0E-71 microPC miR168: 8.0E-58 | UniProt no hits RFAM 8MIR168: 7.0E-74 | most similar mature miRNAs |
Identical with: vvi-MIR168 from miRBase (MNEST041596), vvi-miR168 from PMRD , miR168 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
