ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGTGGCAGTTTCACC mismatches: 1 bulges: 1 |
pre-miRNA
TTCTTCTTCTAATGGGTGCACCACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTGCTTCCCTTTGTGAACAGAGATCAGATCATGTGGCAGTTTCAC
CTGTTGTTGGTAGCACAAGAAACCCTAAT
dot-bracket secondary structure
......((((.....((((((((.((.(((.(((((((((((.((((((((...(((..(((.......)))..)))...))))))))))))))))))).
))).)).)))).)))).))))........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TTCTTCTTCTAATGGGTGCACCACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTGCTTCCCTTTGTGAACAGAGATCAGATCATGTGGCAGTTTCAC
CTGTTGTTGGTAGCACAAGAAACCCTAAT
dot-bracket secondary structure
......((((.....((((((((.((.(((.(((((((((((.((((((((...(((..(((.......)))..)))...))))))))))))))))))).
))).)).)))).)))).))))........
SIMILARITIES| miRBase vvi-MIR167e: 7e-46 PMRD vvi-miR167e: 7e-46 microPC miR167: 0.000000000007 | UniProt no hits RFAM MIR167_1: 2e-46 | most similar mature miRNAs |
Identical with: vvi-MIR167e from miRBase (MNEST041595) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
