ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGTCAATATC miRNA* TATTGGCGTGCCTCAATTTAA mismatches: 2 bulges: 0 |
pre-miRNA
AAATATGGGGGGAGGTATTGGCGTGCCTCAATTTAAAGACATGGTTAGATGAAGAGATATTAGCCATGTGATTTGATTGAGCCGCGTCAATATCTCCTTT
TGCACC
dot-bracket secondary structure
......(((((((((((((((((((.(((((((.((..((((((((((...........))))))))))..)).))))))).))))))))))))))))))
).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAATATGGGGGGAGGTATTGGCGTGCCTCAATTTAAAGACATGGTTAGATGAAGAGATATTAGCCATGTGATTTGATTGAGCCGCGTCAATATCTCCTTT
TGCACC
dot-bracket secondary structure
......(((((((((((((((((((.(((((((.((..((((((((((...........))))))))))..)).))))))).))))))))))))))))))
).....
SIMILARITIES| miRBase vvi-MIR171b: 2e-51 PMRD vvi-miR171b: 2e-51 microPC miR171: 8e-42 | UniProt no hits RFAM MIR171_1: 2e-52 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST046553) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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