ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGATGCAGCGGTTCATCGATC mismatches: 2 bulges: 0 |
pre-miRNA
TGGGTTTGAGTTGGGGTTGGTTTGAAGTCACTGGATGCAGCGGTTCATCGATCTCTTCCTGAAATTGTTGTGAAAAAAGCAGATCAAGAATCGGTCGATA
AACCTCTGCATCCAGCGTTCACTCCCTCTCTCTTATTCTCTCTT
dot-bracket secondary structure
.(((...((((.((((..((..((((....((((((((((.((((.(((((((..(((.(((..(((((........))))).))).)))..))))))).
)))).))))))))))..))))...))...)))).)))).)))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TGGGTTTGAGTTGGGGTTGGTTTGAAGTCACTGGATGCAGCGGTTCATCGATCTCTTCCTGAAATTGTTGTGAAAAAAGCAGATCAAGAATCGGTCGATA
AACCTCTGCATCCAGCGTTCACTCCCTCTCTCTTATTCTCTCTT
dot-bracket secondary structure
.(((...((((.((((..((..((((....((((((((((.((((.(((((((..(((.(((..(((((........))))).))).)))..))))))).
)))).))))))))))..))))...))...)))).)))).)))..
SIMILARITIES| miRBase vvi-MIR162: 1e-53 PMRD vvi-miR162: 1e-53 microPC miR162: 7e-43 | UniProt no hits RFAM MIR162_2: 2e-43 | most similar mature miRNAs |
Identical with: miR162 from microPC (MNEST046792) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
