ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTCTTCCTCTTCCTCTTCGG miRNA* AAAGAGCCGAGGAGGAATTC mismatches: 4 bulges: 1 |
pre-miRNA
AAGGCCTACTCCAAAGAGCCGAGGAGGAATTCGGCTTTAATCACGACATGGGTCTTACCATCCCTTGTGAGGAAGTAGTTTTTCTCTCTCTAACAGCCAT
GATCAGATGAAAGAAAAGCTTTTCAAAGAGGTTGTTGGAGGGAGATGACAAAGATGAAGCTGAATCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCCTCTTCCTCTTCGGATTAATAAC
dot-bracket secondary structure
......((.(((.(((((..(((((((((....(((((..((((((.((((......))))...)))))).))))).(((..((((((((((((((((..
..((...((((((......))))))..)))))))))))))))))).))).((((.((((..(((...........................)))..))))
.)))).)))))))))...))))).))).)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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AAGGCCTACTCCAAAGAGCCGAGGAGGAATTCGGCTTTAATCACGACATGGGTCTTACCATCCCTTGTGAGGAAGTAGTTTTTCTCTCTCTAACAGCCAT
GATCAGATGAAAGAAAAGCTTTTCAAAGAGGTTGTTGGAGGGAGATGACAAAGATGAAGCTGAATCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCCTCTTCCTCTTCGGATTAATAAC
dot-bracket secondary structure
......((.(((.(((((..(((((((((....(((((..((((((.((((......))))...)))))).))))).(((..((((((((((((((((..
..((...((((((......))))))..)))))))))))))))))).))).((((.((((..(((...........................)))..))))
.)))).)))))))))...))))).))).)).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P33079|A10A5_SOYBN: 0.0003 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
