ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTGAAGTCCAATAG mismatches: 3 bulges: 0 |
pre-miRNA
GGGTTTTGGAGTGGAGCTCCTTGAAGTCCAATAGAGGGTCTTACTGGGTAGATTGAGCTGCTGACTTATGGATCCCACAGCCCTATCCCGTCAATGGGGG
CATTGGATAGGCTTGTGGCTTGCATATCTCAGGAGCTGCATTATCCAAGTTTAGATCCTTGTTTGGATTGAAGGGAGCTCTACACCTCTCTC
dot-bracket secondary structure
(((....((.((((((((((((..(((((((..((((((((.(((((((((..((((((.((((..((((....((((((.(((((((.(((......))
)...))))))).))))))....))))..)))).)))).)))))))).)))..))))))))..)))))))..)))))))))))).)).)))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
GGGTTTTGGAGTGGAGCTCCTTGAAGTCCAATAGAGGGTCTTACTGGGTAGATTGAGCTGCTGACTTATGGATCCCACAGCCCTATCCCGTCAATGGGGG
CATTGGATAGGCTTGTGGCTTGCATATCTCAGGAGCTGCATTATCCAAGTTTAGATCCTTGTTTGGATTGAAGGGAGCTCTACACCTCTCTC
dot-bracket secondary structure
(((....((.((((((((((((..(((((((..((((((((.(((((((((..((((((.((((..((((....((((((.(((((((.(((......))
)...))))))).))))))....))))..)))).)))).)))))))).)))..))))))))..)))))))..)))))))))))).)).)))..
SIMILARITIES| miRBase vvi-MIR159c: 1e-100 PMRD vvi-miR159c: 1e-100 microPC miR159: 7e-93 | UniProt no hits RFAM MIR159: 1e-100 | most similar mature miRNAs |
Identical with: miR159 from microPC (MNEST045060) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
