ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GCCTTCCTTGAAGTCCAATAG mismatches: 5 bulges: 0 |
pre-miRNA
GGGTTTTGGAGTGGCCTTCCTTGAAGTCCAATAGAGGGTCTTACTGGGTAGATTCATCTGCTGACTTATGGATCCCACAGCCCTATCCCGTCAATGGGGG
GCATTGGATAGGCTTGTGGCTTGCATCTCTCAGGAGCTGCATTATCCAAGTTTAGATCCTTGTTTGGATTGAAGGGAGCTCTACACCTCTCTC
dot-bracket secondary structure
(((....((.((((..((((((..(((((((..((((((((.(((((((((((((((..........)))))))((((((.(((((((.(((.......)
))...))))))).))))))..((((.(((....))).)))).))))).)))..))))))))..)))))))..))))))..)))).)).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
GGGTTTTGGAGTGGCCTTCCTTGAAGTCCAATAGAGGGTCTTACTGGGTAGATTCATCTGCTGACTTATGGATCCCACAGCCCTATCCCGTCAATGGGGG
GCATTGGATAGGCTTGTGGCTTGCATCTCTCAGGAGCTGCATTATCCAAGTTTAGATCCTTGTTTGGATTGAAGGGAGCTCTACACCTCTCTC
dot-bracket secondary structure
(((....((.((((..((((((..(((((((..((((((((.(((((((((((((((..........)))))))((((((.(((((((.(((.......)
))...))))))).))))))..((((.(((....))).)))).))))).)))..))))))))..)))))))..))))))..)))).)).)))..
SIMILARITIES| miRBase vvi-MIR159c: 5e-91 PMRD vvi-miR159c: 5e-91 microPC miR159: 2e-81 | UniProt no hits RFAM MIR159: 5e-91 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
