ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: miR166m
source: miRNEST
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGGCTGGCTCGAGG miRNA* TCGGACCAGGCTTCATTCCCC mismatches: 2 bulges: 2 |
pre-miRNA
TGTCTGTCTTCTTATTTGAGGGGAATGTTGGCTGGCTCGAGGCTTTTCAGTTTCACAAAGGAAGTTCAGTCTTAATTGTATGAACTATAAGGCTTCGGAC
CAGGCTTCATTCCCCTCAAAATCTTAATTGTTT
dot-bracket secondary structure
..............(((((((((((((..((((((.((((((((((..(((((.((((((((.......))))..))))..)))))..)))))))))).)
)).))).))))))))))))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTCTGTCTTCTTATTTGAGGGGAATGTTGGCTGGCTCGAGGCTTTTCAGTTTCACAAAGGAAGTTCAGTCTTAATTGTATGAACTATAAGGCTTCGGAC
CAGGCTTCATTCCCCTCAAAATCTTAATTGTTT
dot-bracket secondary structure
..............(((((((((((((..((((((.((((((((((..(((((.((((((((.......))))..))))..)))))..)))))))))).)
)).))).))))))))))))).............
SIMILARITIES| miRBase mtr-MIR166e: 2e-55 PMRD mtr-miR166b: 2e-49 microPC miR166: 1e-50 | UniProt no hits RFAM mir-166: 3e-54 | most similar mature miRNAs |
Identical with: miR166 from microPC (MNEST046081) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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