miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST008447
species: Sorghum bicolor
miRNA family: MIRf160
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTGCAGCAGCAGCAGCTGCTG

miRNA*
 CCGGTCGTCCCTGCTCCAGGT

mismatches: 5
bulges: 0
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pre-miRNA
 CCGCGCACGCCCTGCAGCAGCAGCAGCTGCTGCCGCCGCCTCGGGGCGCGTGTCGAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACAAGGATCGCCTTCTTCTTCTTAACCACCACCACCGCCGCCGCCGCC
ACCAAGTGCTCAGTAGCAGAGCAAGGAGGGGGATCAGCGTCGCGAGATTCGGCACTCAGGAGGTAAATGTGCGTTAGGAGCTACAGCAGCAATGGCATCG
CTGGTACCCGGGGTCCTCCTGAAGCTGCTCCAGCACATGAACAGCGACGTCAAGGTGGGCGGCGAGCACCGGTCGTCCCTGCTCCAGGTCGTCAGCA

dot-bracket secondary structure
..((..(((.((((.(((((..((.((((.((((((((((((((((((.(((......((.((...((((((((((((..((..................
...........................................................))..))))))))))))..)).))..))))))).)))((.((
.((...(((((.......))))).)).)))).(((.(((((((....(((...(((.....)))..((((((....(((((...(((..((..((.(((.
((((...)))))))))...))..)))))))).)))))))))..)))))))...))))))))))).))).)))).))..))))).)))).)))..)).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-598: 0.0001		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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