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ABOUT THIS RECORD
ID:
MNEST008447
species:
Sorghum bicolor
miRNA family:
MIRf160
source:
miRNEST
Taxonomy by NCBI:
Sorghum bicolor
Sorghum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTGCAGCAGCAGCAGCTGCTG
miRNA*
CCGGTCGTCCCTGCTCCAGGT
mismatches:
5
bulges:
0
View larger
pre-miRNA
CCGCGCACGCC
CTGCAGCAGCAGCAGCTGCTG
CCGCCGCCTCGGGGCGCGTGTCGAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACAAGGATCGCCTTCTTCTTCTTAACCACCACCACCGCCGCCGCCGCC
ACCAAGTGCTCAGTAGCAGAGCAAGGAGGGGGATCAGCGTCGCGAGATTCGGCACTCAGGAGGTAAATGTGCGTTAGGAGCTACAGCAGCAATGGCATCG
CTGGTACCCGGGGTCCTCCTGAAGCTGCTCCAGCACATGAACAGCGACGTCAAGGTGGGCGGCGAGCA
CCGGTCGTCCCTGCTCCAGGT
CGTCAGCA
dot-bracket secondary structure
..((..(((.(
(((.(((((..((.((((.((
((((((((((((((((.(((......((.((...((((((((((((..((..................
...........................................................))..))))))))))))..)).))..))))))).)))((.((
.((...(((((.......))))).)).)))).(((.(((((((....(((...(((.....)))..((((((....(((((...(((..((..((.(((.
((((...)))))))))...))..)))))))).)))))))))..)))))))...))))))))))).)))
.)))).))..))))).)))).
)))..)).
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-598: 0.0001
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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