ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR2011
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTGGCATATGCAAGTCT miRNA* GCTGGCAATGTCTGTGTAGC mismatches: 4 bulges: 1 |
pre-miRNA
TGGAAAGGGCAAGCTGGCAATGTCTGTGTAGCATCTTTCGATTGGAGCTGCAGTGGCATATGCAAGTCTGCTGAGAGG
dot-bracket secondary structure
.......((((.(((.((((((((..((((((.(((.......)))))))))..))))).))).))).))))......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGGAAAGGGCAAGCTGGCAATGTCTGTGTAGCATCTTTCGATTGGAGCTGCAGTGGCATATGCAAGTCTGCTGAGAGG
dot-bracket secondary structure
.......((((.(((.((((((((..((((((.(((.......)))))))))..))))).))).))).))))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q8LEJ9|B3GT4_ARATH: 0.00000003 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
