ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIRf1673
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGGCTGCGGCTGCAGTTGAG miRNA* TCACTGCGCCACGGCCCCCG mismatches: 2 bulges: 1 |
pre-miRNA
TGGCTACCTTCACTGCGCCACGGCCCCCGAGCCCGGAGCCCCGGATGACCACATCAGCTGCCGACGATGGCAGTTCTTTGGCGCCTACCGTGACGGAGGG
AGAAACCACAGCCGAGGCCGGGGCTGGGGCAGTTGTTGAAGAGTGCGCCGAGGGCAAGGAGACGAAGGTGGGGGCTGCGGCTGCAGTTGAGGAGCCGGAT
GAGGAGGCGC
dot-bracket secondary structure
(((((.((((.((((((((.(((((((((.((((..((((((((.(((.....)))((((((......)))))).(((((((.(((.(((...))).)))
..........))))))))))))))).))))..(((((......(((.......)))....)))))...))))))))).))).))))).)))))))))...
..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGGCTACCTTCACTGCGCCACGGCCCCCGAGCCCGGAGCCCCGGATGACCACATCAGCTGCCGACGATGGCAGTTCTTTGGCGCCTACCGTGACGGAGGG
AGAAACCACAGCCGAGGCCGGGGCTGGGGCAGTTGTTGAAGAGTGCGCCGAGGGCAAGGAGACGAAGGTGGGGGCTGCGGCTGCAGTTGAGGAGCCGGAT
GAGGAGGCGC
dot-bracket secondary structure
(((((.((((.((((((((.(((((((((.((((..((((((((.(((.....)))((((((......)))))).(((((((.(((.(((...))).)))
..........))))))))))))))).))))..(((((......(((.......)))....)))))...))))))))).))).))))).)))))))))...
..........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
