ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAAATCGGGAC miRNA* CCCACCTTGCACCAAGGGAAT mismatches: 5 bulges: 0 |
pre-miRNA
CCACGTCGGGTTCGCTTGGTGCAAATCGGGACCTGCGGCCCTGCTCGGACCGGACAGATCCCACCTTGCACCAAGGGAATCCGAGCCG
dot-bracket secondary structure
.....((((((((.((((((((((...((((.((((((.((.....)).)))..))).))))...)))))))))).))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCACGTCGGGTTCGCTTGGTGCAAATCGGGACCTGCGGCCCTGCTCGGACCGGACAGATCCCACCTTGCACCAAGGGAATCCGAGCCG
dot-bracket secondary structure
.....((((((((.((((((((((...((((.((((((.((.....)).)))..))).))))...)))))))))).))))))))....
SIMILARITIES| miRBase sbi-MIR168: 3e-25 PMRD sbi-miR168: 3e-25 microPC miR168: 2e-32 | UniProt no hits RFAM MIR168: 6e-24 | most similar mature miRNAs |
Identical with: miR168 from microPC (MNEST046040) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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