ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTCTTCCTCTTCCTCTTCAT miRNA* AGGGAGGAGGAGGAAGAGGGA mismatches: 4 bulges: 0 |
pre-miRNA
AGCCCGGTGTTGCTCTGTATTCTTCTTCCTCTTCCTCTTCATTTCCTCCACCGCTCGCTCACCTCTTCTTCTCCTCCCCCCACTCCAGCCATGAATATGA
TCGTCAGAAGCTGCTAGCATCATCTGCCGCCTCAACTTCGTCACCTCCTCCTCTCCATTCTATCCCCGCGCAGCTGCCCCAGCTGTATATATCCCCGCGC
CCAATTTGGTCCCTCCCTGGTGTGGGTGAGGTCAGCTGTTTTAGCGCAGCGCAGCGCGCGGGCGGGCGGCGTGGCAGCAAAGGAAGCAAGGAGAACAGCG
GCGGCGGCGTAGCATGCGGCGGTGAGGGAGGGAGGAGGAGGAAGAGGGAGCCGCCAAGAGAGCG
dot-bracket secondary structure
...........(((((((.(((((((((((((((((((....(((((.((((((.(((......(((((...............................
.....))))).(((((((.....(((((((.....((((......((((...((((((.((.(((((((((.(((((..((((((.((...(((((((((
(......((......)).)))))))).)).)))))))).......))))).....))))))).))..)).)))).))...)))).....))))....)))
))))..)).))))).))))))))).))))))))))))))))))))))))...))....))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGCCCGGTGTTGCTCTGTATTCTTCTTCCTCTTCCTCTTCATTTCCTCCACCGCTCGCTCACCTCTTCTTCTCCTCCCCCCACTCCAGCCATGAATATGA
TCGTCAGAAGCTGCTAGCATCATCTGCCGCCTCAACTTCGTCACCTCCTCCTCTCCATTCTATCCCCGCGCAGCTGCCCCAGCTGTATATATCCCCGCGC
CCAATTTGGTCCCTCCCTGGTGTGGGTGAGGTCAGCTGTTTTAGCGCAGCGCAGCGCGCGGGCGGGCGGCGTGGCAGCAAAGGAAGCAAGGAGAACAGCG
GCGGCGGCGTAGCATGCGGCGGTGAGGGAGGGAGGAGGAGGAAGAGGGAGCCGCCAAGAGAGCG
dot-bracket secondary structure
...........(((((((.(((((((((((((((((((....(((((.((((((.(((......(((((...............................
.....))))).(((((((.....(((((((.....((((......((((...((((((.((.(((((((((.(((((..((((((.((...(((((((((
(......((......)).)))))))).)).)))))))).......))))).....))))))).))..)).)))).))...)))).....))))....)))
))))..)).))))).))))))))).))))))))))))))))))))))))...))....))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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