ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR528
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGGGGCATGCAGAGGAG miRNA* CTCCTGTGCCTGCCTCTTCCATT mismatches: 1 bulges: 2 |
pre-miRNA
AGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCACGAGGCTTGGCTGGAAGCCGACCTACGCCTCGCTGGCTCTCCTGTGCCTGCCTCTTCCATTCCTTC
TGC
dot-bracket secondary structure
.((((.((.((((((((((((((((((.(((((.((((((((((((...)))))).....))))))...))))).)))))..))))))))))))).)).)
)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCACGAGGCTTGGCTGGAAGCCGACCTACGCCTCGCTGGCTCTCCTGTGCCTGCCTCTTCCATTCCTTC
TGC
dot-bracket secondary structure
.((((.((.((((((((((((((((((.(((((.((((((((((((...)))))).....))))))...))))).)))))..))))))))))))).)).)
)))
SIMILARITIES| miRBase sbi-MIR528: 2e-42 PMRD osa-miR528: 0.0000003 microPC miR528: 7e-39 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: sbi-MIR528 from miRBase (MNEST042623) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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