ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR528
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGGGGCATGCAAAGGAG miRNA* CCTGTGCCTGCCTCTTCCATT mismatches: 2 bulges: 0 |
pre-miRNA
ACTGTAGCAGCAGCAGCAGCAGTGGAAGGGGCATGCAAAGGAGCACAAGGCTTGGCTGGAAGCCGACCTACGCCTCGCTGGCTCTCCTGTGCCTGCCTCTT
CCATTCCTTCTGCTACGCTATGA
dot-bracket secondary structure
)..(((((...(((((.((.(((((((((((((.(((.(((((....(((.((((((...)))))))))..(((.....))).))))).))).))))))))
))))).)).)))))..)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ACTGTAGCAGCAGCAGCAGCAGTGGAAGGGGCATGCAAAGGAGCACAAGGCTTGGCTGGAAGCCGACCTACGCCTCGCTGGCTCTCCTGTGCCTGCCTCTT
CCATTCCTTCTGCTACGCTATGA
dot-bracket secondary structure
)..(((((...(((((.((.(((((((((((((.(((.(((((....(((.((((((...)))))))))..(((.....))).))))).))).))))))))
))))).)).)))))..)))))..
SIMILARITIES| miRBase sbi-MIR528: 1.0E-37 PMRD osa-miR528: 9.0E-5 microPC miR528: 4.0E-41 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR528 from microPC (MNEST046551) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
