ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGTCTGGTTCAAGG mismatches: 3 bulges: 0 |
pre-miRNA
TGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCGCTTGTGATTTAAGGATGATTTGTGCATGCGTAATTTTTATTCCTTGAATCTAT
GAGATCTCGGACCAGGCTTCATTCCCCTCAGCAATAGCTTCAAAT
dot-bracket secondary structure
((((((((((.((...((((.((((((..(((((((((.((((((((.....((((((((((.((....(((....)))...))...))))))))))..)
))))))).)))))))))..)))))).))))))))))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCGCTTGTGATTTAAGGATGATTTGTGCATGCGTAATTTTTATTCCTTGAATCTAT
GAGATCTCGGACCAGGCTTCATTCCCCTCAGCAATAGCTTCAAAT
dot-bracket secondary structure
((((((((((.((...((((.((((((..(((((((((.((((((((.....((((((((((.((....(((....)))...))...))))))))))..)
))))))).)))))))))..)))))).))))))))))))))))...
SIMILARITIES| miRBase sbi-MIR166a: 1e-56 PMRD sbi-miR166a: 1e-56 microPC miR166: 8e-55 | UniProt no hits RFAM mir-166: 3e-61 | most similar mature miRNAs |
Identical with: sbi-MIR166a from miRBase (MNEST042508) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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