ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: miR168a
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTGCACCAAGTGAAT miRNA* TCGCTTGGTGCAGATCGGGAC mismatches: 3 bulges: 0 |
pre-miRNA
CCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCTGCCGCCGTGCTCGGACGGGACAGATCCCGCCTTGCACCAAGTGAATCCGAGCC
dot-bracket secondary structure
)...((((((.(((((((((((((..(((((.(((((((((....))).)))..))).)))))..))))))))))))).))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCTGCCGCCGTGCTCGGACGGGACAGATCCCGCCTTGCACCAAGTGAATCCGAGCC
dot-bracket secondary structure
)...((((((.(((((((((((((..(((((.(((((((((....))).)))..))).)))))..))))))))))))).))))))..
SIMILARITIES| miRBase sbi-MIR168: 1.0E-43 PMRD sbi-miR168: 1.0E-43 microPC miR168: 2.0E-32 | UniProt no hits RFAM 8MIR168: 2.0E-42 | most similar mature miRNAs |
Identical with: miR168 from microPC (MNEST044880), sbi-miR168 from PMRD , miR168 from microPC , sbi-MIR168 from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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