ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: miR168a
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTGCACCAAGTGAAT miRNA* TCGCTTGGTGCAGATCGGGAC mismatches: 3 bulges: 0 |
pre-miRNA
CGCCTCGGGCTCGCTTGGTGCAGATCGGGACCTGCCGCCGTGCTCGGACGGGACAGATCCCGCCTTGCACCAAGTGAATCCGAGCC
dot-bracket secondary structure
...((((((.(((((((((((((..(((((.(((((((((....))).)))..))).)))))..))))))))))))).))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGCCTCGGGCTCGCTTGGTGCAGATCGGGACCTGCCGCCGTGCTCGGACGGGACAGATCCCGCCTTGCACCAAGTGAATCCGAGCC
dot-bracket secondary structure
...((((((.(((((((((((((..(((((.(((((((((....))).)))..))).)))))..))))))))))))).))))))..
SIMILARITIES| miRBase sbi-MIR168: 1e-43 PMRD sbi-miR168: 1e-43 microPC miR168: 2e-32 | UniProt no hits RFAM MIR168: 2e-42 | most similar mature miRNAs |
Identical with: miR168 from microPC (MNEST044880) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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