ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAGC mismatches: 0 bulges: 2 |
pre-miRNA
TGGCCGAGAGCAGGAGAAGAGGAGGGGCCGGCCTCGCATGGCGATGAGAGCACTGCTCTGGTAGCCAAGGATGACTTGCCTGTGGCCTCCACTCCACCTG
CGGCAGGAGGCTCTTCTTCTGCGCGCGCGTGTGTGTGTGGTTGTCGATCGCAGGCAGTCTCCTTGGCTAGCCTCAGCGGCTCTCATCCTTCATGCCAGGC
TCGTCTCTTCTTCAGTTTAATTTCATCAC
dot-bracket secondary structure
.....((((....(((..((((((((((.(((((.((((((.(((((((((...(((..((((((((((((.((((.((((((((...((((..(((.((
((((((((((....)))))))).)))).))).....)))).......)))))))))))))))))))))).))..))).)))))))))..)))))).))))
).))))))))))...)))..)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGGCCGAGAGCAGGAGAAGAGGAGGGGCCGGCCTCGCATGGCGATGAGAGCACTGCTCTGGTAGCCAAGGATGACTTGCCTGTGGCCTCCACTCCACCTG
CGGCAGGAGGCTCTTCTTCTGCGCGCGCGTGTGTGTGTGGTTGTCGATCGCAGGCAGTCTCCTTGGCTAGCCTCAGCGGCTCTCATCCTTCATGCCAGGC
TCGTCTCTTCTTCAGTTTAATTTCATCAC
dot-bracket secondary structure
.....((((....(((..((((((((((.(((((.((((((.(((((((((...(((..((((((((((((.((((.((((((((...((((..(((.((
((((((((((....)))))))).)))).))).....)))).......)))))))))))))))))))))).))..))).)))))))))..)))))).))))
).))))))))))...)))..)))).....
SIMILARITIES| miRBase sbi-MIR169f: 3e-80 PMRD sbi-miR169f: 3e-80 microPC miR169: 2e-56 | UniProt no hits RFAM MIR169_5: 6e-79 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST044994) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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