ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCAGTCTCCTTGGCTAGC mismatches: 0 bulges: 2 |
pre-miRNA
CACACAACAGAGATGATAGAGTAGAGATTGAGAGATAGCAAGCCTTACATGGCAATAAGGTTGAGTTCTGGTAGCCAAGGATGACTTGCCTATATCCTCT
CTAAAGGATCAGCAAATATTGAGGCTTCTAGTGGTCTCATATGGGCAGTCTCCTTGGCTAGCCTGACTCACTCTTATTTCTCATGCTAGGCTTGCATCTT
ATTTGGAGGTCATTTCACATATTTTTATGA
dot-bracket secondary structure
.........((((((((........((.(((((....((((((((..(((((.(((((((.((((((..((((((((((((.((((.((((((((((...
(((.(((.((((......))))..))).))).))....)))))))))))))))))))))).)).)))))).)))))))..)))))..)))))))).))))
).))....)))))))).((((....)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CACACAACAGAGATGATAGAGTAGAGATTGAGAGATAGCAAGCCTTACATGGCAATAAGGTTGAGTTCTGGTAGCCAAGGATGACTTGCCTATATCCTCT
CTAAAGGATCAGCAAATATTGAGGCTTCTAGTGGTCTCATATGGGCAGTCTCCTTGGCTAGCCTGACTCACTCTTATTTCTCATGCTAGGCTTGCATCTT
ATTTGGAGGTCATTTCACATATTTTTATGA
dot-bracket secondary structure
.........((((((((........((.(((((....((((((((..(((((.(((((((.((((((..((((((((((((.((((.((((((((((...
(((.(((.((((......))))..))).))).))....)))))))))))))))))))))).)).)))))).)))))))..)))))..)))))))).))))
).))....)))))))).((((....)))).
SIMILARITIES| miRBase sbi-MIR169m: 8e-47 PMRD sbi-miR169m: 8e-47 microPC miR169: 5e-45 | UniProt no hits RFAM MIR169_5: 5e-67 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST044953) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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