ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTACTCCCTCCGTTCCAAATA miRNA* TTTGGAACTGGAAGAGTACTC mismatches: 2 bulges: 2 |
pre-miRNA
TACTTCAAAAAGTACTCCCTCCGTTCCAAATAAAGTGAAAATAATTTGGAACTGGAAGAGTACTCCGGA
dot-bracket secondary structure
..........(((((((..((((((((((((...((....)).))))))))).))).))))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACTTCAAAAAGTACTCCCTCCGTTCCAAATAAAGTGAAAATAATTTGGAACTGGAAGAGTACTCCGGA
dot-bracket secondary structure
..........(((((((..((((((((((((...((....)).))))))))).))).))))))).....
SIMILARITIES| miRBase tae-MIR1137: 0.0007 PMRD tae-miR1137: 0.0007 microPC miR1439: 0.0007 | UniProt no hits RFAM MIR1122: 0.0002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
