ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTGTCTCAAGCTTGCTGCC miRNA* TGACAAGCTAGAGGCAGCAAC mismatches: 2 bulges: 0 |
pre-miRNA
ATTAATGCAAGGGGCGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTTGAACCATACCGATCATTTTCTTGCAAGTTGTGCA
GTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAA
dot-bracket secondary structure
......((((((((.((((.((((((.(((((((((((((((((.(((((((((((((((((...((...)).)))))...)))))))))))).))))))
))))))))))).)))))).)))).)))))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTAATGCAAGGGGCGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTTGAACCATACCGATCATTTTCTTGCAAGTTGTGCA
GTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAA
dot-bracket secondary structure
......((((((((.((((.((((((.(((((((((((((((((.(((((((((((((((((...((...)).)))))...)))))))))))).))))))
))))))))))).)))))).)))).)))))))).....
SIMILARITIES| miRBase ssp-MIR444c: 8e-52 PMRD pvi-miR444: 1e-53 microPC miR444: 1e-56 | UniProt sp|Q6EP49|MAD27_ORYSJ: 0.0001 RFAM MIR444: 4e-60 | most similar mature miRNAs |
Identical with: miR444 from microPC (MNEST045135) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
