ABOUT THIS RECORDspecies: Saccoglossus kowalevskii
miRNA family: miR-1788
source: miRNEST
Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCTTGTTTTCCGTTGGATGG miRNA* GTCAAACAGAGAAAACAGGCTCG mismatches: 2 bulges: 2 |
pre-miRNA
TTCGTATTCGGGGCTTGTTTTCCGTTGGATGGGGATAGTGGGGAGGGGGTTTCAAAAATTCAGTCACCACCGCCTGAAATAACGCACAATACAATGCAGT
ACGTGAGTTTTCGTGAAATTTCGCCAACGACTGTTCCGTCAAACAGAGAAAACAGGCTCGTCGTGTGC
dot-bracket secondary structure
...((((.((((((((((((((.(((.(((((((....((.((..(((((((((((((((((.(((........)))..((..(((........)))..)
)..))))))))..))))))))).))..))....))))))).)))...)))))))))))..))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTCGTATTCGGGGCTTGTTTTCCGTTGGATGGGGATAGTGGGGAGGGGGTTTCAAAAATTCAGTCACCACCGCCTGAAATAACGCACAATACAATGCAGT
ACGTGAGTTTTCGTGAAATTTCGCCAACGACTGTTCCGTCAAACAGAGAAAACAGGCTCGTCGTGTGC
dot-bracket secondary structure
...((((.((((((((((((((.(((.(((((((....((.((..(((((((((((((((((.(((........)))..((..(((........)))..)
)..))))))))..))))))))).))..))....))))))).)))...)))))))))))..))).))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
