ABOUT THIS RECORDspecies: Nematostella vectensis
miRNA family: mir-548
source: miRNEST
Taxonomy by NCBI:
Nematostella vectensis Nematostella Edwardsiidae Actiniaria Hexacorallia Anthozoa Cnidaria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATACTGTAATTACTTTTATT miRNA* TGCAGCTAATTCCAATGTTTA mismatches: 4 bulges: 0 |
pre-miRNA
ACAATTTATACAAGGAAATCATTACACAGAAGTTGTAAGAGAAATACTGTAATTACTTTTATTTGGAGAAAAAGCCGAATGCAGCTAATTCCAATGTTTA
TTGCCTGCCTTTGTTAGAATGCCTTGTGTATATTGGTGT
dot-bracket secondary structure
.((((.(((((((((....((((..(((((.((.((((...(((((.((.(((((.((.(((((((........))))))).)).))))).)).))))).
))))..)).)))))...))))))))))))).))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACAATTTATACAAGGAAATCATTACACAGAAGTTGTAAGAGAAATACTGTAATTACTTTTATTTGGAGAAAAAGCCGAATGCAGCTAATTCCAATGTTTA
TTGCCTGCCTTTGTTAGAATGCCTTGTGTATATTGGTGT
dot-bracket secondary structure
.((((.(((((((((....((((..(((((.((.((((...(((((.((.(((((.((.(((((((........))))))).)).))))).)).))))).
))))..)).)))))...))))))))))))).))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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