ABOUT THIS RECORDspecies: Daphnia pulex
miRNA family: mir-10
source: miRNEST
Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTCTAGAACCGAATTTGTC miRNA* CAAATTCGGATCTACAGGGT mismatches: 3 bulges: 1 |
pre-miRNA
GCCCACACGAACCTCTCTAGAACCGAATTTGTCTTGTGATGCAACTACAAATTCGGATCTACAGGGTAGATGTAG
dot-bracket secondary structure
).....(((.(((.((.((((.((((((((((.((((...))))..)))))))))).)))).)))))...)))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCCCACACGAACCTCTCTAGAACCGAATTTGTCTTGTGATGCAACTACAAATTCGGATCTACAGGGTAGATGTAG
dot-bracket secondary structure
).....(((.(((.((.((((.((((((((((.((((...))))..)))))))))).)))).)))))...)))..
SIMILARITIES| miRBase dpu-mir-10: 1.0E-36 PMRD no hits microPC no hits | UniProt no hits RFAM 0mir-10: 2.0E-11 | most similar mature miRNAs |
Identical with: dpu-mir-10 from miRBase (MNEST035001) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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