ABOUT THIS RECORDspecies: Strongylocentrotus purpuratus
miRNA family: mir-548
source: miRNEST
Taxonomy by NCBI:
Strongylocentrotus purpuratus Strongylocentrotus Strongylocentrotidae Echinoida Echinacea Euechinoidea Echinoidea Echinozoa Eleutherozoa Echinodermata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAAGTAATTGTTGTTTTGGT miRNA* TATAATAACAATTGCTATAAA mismatches: 4 bulges: 0 |
pre-miRNA
TCAATTGAAGAAAAAGTAATTGTTGTTTTGGTTTAAGTCATAGACCTTTTCAAACTATAATAACAATTGCTATAAATGCATTGC
dot-bracket secondary structure
((....))......(((((((((((((.((((((..(((...)))......)))))).))))))))))))).............
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCAATTGAAGAAAAAGTAATTGTTGTTTTGGTTTAAGTCATAGACCTTTTCAAACTATAATAACAATTGCTATAAATGCATTGC
dot-bracket secondary structure
((....))......(((((((((((((.((((((..(((...)))......)))))).))))))))))))).............
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
