ABOUT THIS RECORDspecies: Brassica oleracea
miRNA family: MIR909
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTAGGGTCAAGTTTGCATAG miRNA* GTAAAGATCGACCCAAGGCT mismatches: 4 bulges: 1 |
pre-miRNA
AACCTGAACTGGTCGGTGTATTTTAGGGTCAAGTTTGCATAGTTACGAGGAATGTGATTGTAAAGATCGACCCAAGGCTGCTTGACCGGCTTCAATC
dot-bracket secondary structure
....(((((((((((..(((.(((.(((((..((((..(((((((((.....)))))))))..)))).))))).))).))).))))))).))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACCTGAACTGGTCGGTGTATTTTAGGGTCAAGTTTGCATAGTTACGAGGAATGTGATTGTAAAGATCGACCCAAGGCTGCTTGACCGGCTTCAATC
dot-bracket secondary structure
....(((((((((((..(((.(((.(((((..((((..(((((((((.....)))))))))..)))).))))).))).))).))))))).))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q944G5|PTR44_ARATH: 0.0000000001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
