ABOUT THIS RECORDspecies: Brassica oleracea
miRNA family: miR166d
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGTCTGGCTCGAGG miRNA* TCGGACCAGGCTTCATTCCCC mismatches: 4 bulges: 0 |
pre-miRNA
TCTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGACTCTAGCTCTATCTACTCATGTTGGATCCTCTTCGATCTAATCGAATCAAACCTCTATGTTTGAGA
TCTGATTAGGGTTTTAGTGTCGTCGGACCAGGCTTCATTCCCCCCAATTATT
dot-bracket secondary structure
......(((.((((((((..((((((.((((.(((.......(((...((((..((((((((...((((((...))))))((((((......))))))))
))))))..))))..))).))).)))).))))))..)))))))).))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGACTCTAGCTCTATCTACTCATGTTGGATCCTCTTCGATCTAATCGAATCAAACCTCTATGTTTGAGA
TCTGATTAGGGTTTTAGTGTCGTCGGACCAGGCTTCATTCCCCCCAATTATT
dot-bracket secondary structure
......(((.((((((((..((((((.((((.(((.......(((...((((..((((((((...((((((...))))))((((((......))))))))
))))))..))))..))).))).)))).))))))..)))))))).))).....
SIMILARITIES| miRBase aly-MIR166a: 5e-41 PMRD bna-miR166a: 3e-33 microPC miR166: 4e-63 | UniProt no hits RFAM mir-166: 1e-26 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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