ABOUT THIS RECORDspecies: Brassica oleracea
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAC miRNA* TCCCGCCTTGCATCAATTGAAT mismatches: 2 bulges: 1 |
pre-miRNA
TACAGAGATAGAATCACCGTGGGGCTCGGATTCGCTTGGTGCAGGTCGGGACTGATATGCTGACACAACCACTGGTGCTTTTGCCTTATTGGTTTGTGAG
CAGGTATTGGCTCCCGCCTTGCATCAATTGAATCGGAGCCTCCAATGGTGAAACGAATCCA
dot-bracket secondary structure
.............((((((((((((((.((((((.((((((((((.(((((((((((((((.(((.(((((.(((.((....)).))).)))))))).))
))..)))))).))))).)))))))))).)))))).)))))))..)))))))..........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACAGAGATAGAATCACCGTGGGGCTCGGATTCGCTTGGTGCAGGTCGGGACTGATATGCTGACACAACCACTGGTGCTTTTGCCTTATTGGTTTGTGAG
CAGGTATTGGCTCCCGCCTTGCATCAATTGAATCGGAGCCTCCAATGGTGAAACGAATCCA
dot-bracket secondary structure
.............((((((((((((((.((((((.((((((((((.(((((((((((((((.(((.(((((.(((.((....)).))).)))))))).))
))..)))))).))))).)))))))))).)))))).)))))))..)))))))..........
SIMILARITIES| miRBase ath-MIR168a: 1e-16 PMRD ath-miRf10239-akr: 1e-16 microPC miR168: 6e-19 | UniProt no hits RFAM MIR168: 1e-29 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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