ABOUT THIS RECORDspecies: Brassica oleracea
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TATTGGTACGGTTGAATCGAA mismatches: 1 bulges: 0 |
pre-miRNA
AACTTCTAAGTAGCGATATTGGTACGGTTGAATCGAATCAAATCACTCTATCTTTCTCTTGGGTCAGTTGATTTGATTGAGCCGTGCCAATATCACTATT
ACGACAA
dot-bracket secondary structure
........(((((.(((((((((((((((.(((((((((((...((((............))))...))))))))))).))))))))))))))).)))))
.......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACTTCTAAGTAGCGATATTGGTACGGTTGAATCGAATCAAATCACTCTATCTTTCTCTTGGGTCAGTTGATTTGATTGAGCCGTGCCAATATCACTATT
ACGACAA
dot-bracket secondary structure
........(((((.(((((((((((((((.(((((((((((...((((............))))...))))))))))).))))))))))))))).)))))
.......
SIMILARITIES| miRBase ptc-MIR171i: 0.00000002 PMRD ptc-miR171i: 0.00000002 microPC miR171: 1e-43 | UniProt no hits RFAM MIR171_1: 0.0000004 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST045484) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
