ABOUT THIS RECORDspecies: Brassica oleracea
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGGCAGCGGTTGATCGAT miRNA* CGATAAACCTCTGCATCCAGC mismatches: 3 bulges: 0 |
pre-miRNA
AGTTTGTTAGAGAATAAGGAGCGAAAGATGCTGGAGGCAGCGGTTGATCGATCTCTTTGTGGGAAATTTTGGAAAAAAAAACTCAAAGCATGAACAGATC
GATAAACCTCTGCATCCAGCGGTCGCCACTTTATCACTCGTACTTTTA
dot-bracket secondary structure
.....((..(((.((((((.((((....(((((((.((((.((((.((((((((.((((((.((..((((....))))....))....)))))).)))))
))).)))).)))).))))))).))))..))))))..)))..)).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGTTTGTTAGAGAATAAGGAGCGAAAGATGCTGGAGGCAGCGGTTGATCGATCTCTTTGTGGGAAATTTTGGAAAAAAAAACTCAAAGCATGAACAGATC
GATAAACCTCTGCATCCAGCGGTCGCCACTTTATCACTCGTACTTTTA
dot-bracket secondary structure
.....((..(((.((((((.((((....(((((((.((((.((((.((((((((.((((((.((..((((....))))....))....)))))).)))))
))).)))).)))).))))))).))))..))))))..)))..)).....
SIMILARITIES| miRBase aly-MIR162a: 0.0000000000005 PMRD ath-miR162a: 0.000000000008 microPC miR162: 0.0000000001 | UniProt no hits RFAM MIR162_2: 1e-17 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
